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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17865216_17866325_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17865216 - 17866325
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TAATTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CTTTATATAATT
Flanking Amino Acid:
SSPNSFNLGDGNSSPTHQVE
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74
36.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.6
0.73
0.8
81.6
35.5
Minor 5ss
41.7
-0.9
2.5
45.5
42.9
Minor BPS
57
0.3
1.8
77.51
39.3

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422