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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17869637_17870225_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17869637 - 17870225
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TCTGCAGAGATA
Flanking Amino Acid:
PSKRASAFIQVHCISTEFTP
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
81.8
0.72
1
76.9
42.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
37.8
-0.9
2.4
50.33
41.8

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422