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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17870333_17870611_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17870333 - 17870611
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAA
Flanking Amino Acid:
SRPGDRILDIDIPLSVGILD
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
76.9
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
30.1
-2.3
3.1
38.6
46.4
Minor BPS
66.6
0.52
1.3
71.49
33.9

Associated Gene:

Gene:
TFCP2L1
Ensembl Gene ID:
ENSAPLG00000015648
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016325
17859521 - 17890942
31422