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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17912968_17914734_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17912968 - 17914734
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
CTTCTCCTAATC
Flanking Amino Acid:
PHLAQLTGSKMKLLNLYIKR
Intron Amino Acid Position:
1437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
87.3
0.84
0.7
85.3
29.1
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
56.8
0.19
1.7
67.95
37.8

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036448
17912881 - 18048536
135656
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656