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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17914852_17916895_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17914852 - 17916895
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGATCTGTGACC
Flanking Amino Acid:
LPDIIPGLLQGYDNTESSVR
Intron Amino Acid Position:
1398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72.2
39
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
79.4
0.66
0.8
72.8
37.5
Minor 5ss
32.2
-2
3.5
47.9
47.8
Minor BPS
53.1
0.08
2
66.92
39

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036448
17912881 - 18048536
135656
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656