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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17929771_17930556_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17929771 - 17930556
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTTGTCCTAGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CCTTCCCCAAAT
Flanking Amino Acid:
FDDDMDQLRDVPIDHSDLVA
Intron Amino Acid Position:
1222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
77.4
36.9
Major BPS
68
0.45
1
57.8
39
Major PPT
67.4
0.39
1.1
69.5
35.8
Minor 5ss
44.3
-0.6
2.5
58.3
40.2
Minor BPS
49.3
0.02
2
70.33
46

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656