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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17930804_17931774_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17930804 - 17931774
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGGATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTCTGTTGGATC
Flanking Amino Acid:
KRDGKKDCDIVSRDGGLAVP
Intron Amino Acid Position:
1140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
65.7
0.35
1
55
44.9
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
47.7
-0.2
1.9
61.4
39

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656