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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17931926_17939740_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17931926 - 17939740
Intron Length:
7815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
GTTTGGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATATGTAACA
Flanking Amino Acid:
TNCSHGGLSPSMLDYDTENL
Intron Amino Acid Position:
1089

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.6
0.53
0.9
70.2
41.3
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
49.3
-0
2.2
64.7
41.9

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656
ENSAPLT00000030590
17911881 - 18048536
136656