Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17945467_17952839_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17945467 - 17952839

Intron Length:

7373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCAAACCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

CTTTAAATAATA

Flanking Amino Acid:

TEPKSSDVRKTMHSWVGEDL

Intron Amino Acid Position:

974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

0.34

56.4

42.7

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

48.5

-0.1

66.63

39.6

Associated Gene:

Gene:

CLASP1

Ensembl Gene ID:

ENSAPLG00000002082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036970

17911881 - 18048536

136656

ENSAPLT00000017634

17911881 - 18048536

136656

ENSAPLT00000002324

17911881 - 18034699

122819

ENSAPLT00000044738

17912326 - 18048536

136211