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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17953814_17954785_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17953814 - 17954785
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTCTTTGGACA
Flanking Amino Acid:
AKVQKALDVTRDSFPFDQQF
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
77.3
0.61
1
75.8
38.2
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
58.6
0.26
1.4
71.98
33.4

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656
ENSAPLT00000030590
17911881 - 18048536
136656