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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17961218_17963503_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17961218 - 17963503
Intron Length:
2286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAA
U12 Branch Point Sequence:
TTTTTCCCACCC
Flanking Amino Acid:
DLEAAVADALLLGDSRSKKK
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
65.8
0.39
1.1
69.2
36.3
Major PPT
75.8
0.58
0.8
68.3
32.1
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
48.8
-0.1
2.1
70.95
40.3

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000044738
17912326 - 18048536
136211