Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17963608_17969200_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17963608 - 17969200

Intron Length:

5593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTTGTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

ATGCATTTAACA

Flanking Amino Acid:

TSPARGFPPLDRFGLGQPGR

Intron Amino Acid Position:

766

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.8

78.5

30.1

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

80.3

0.68

0.9

76.2

37.8

Minor 5ss

30.7

-2.2

2.5

31.6

35.9

Minor BPS

61.4

0.35

1.5

68.31

37.7

Associated Gene:

Gene:

CLASP1

Ensembl Gene ID:

ENSAPLG00000002082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044738

17912326 - 18048536

136211

ENSAPLT00000036448

17912881 - 18048536

135656