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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_17974582_17976346_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17974582 - 17976346
Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
QRSRSANPAGAGSRSSSPGK
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.3
0.53
0.9
65.6
41
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000030590
17911881 - 18048536
136656