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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18027604_18028903_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18027604 - 18028903
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
DLSKKGLPQSRLNVIFTKFD
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64.4
0.32
1
59.5
40.1
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656