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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18030744_18030829_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18030744 - 18030829
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TCTTTATTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTG
Flanking Amino Acid:
ICLCLIATLNASGAQSLTLS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.4
62.5
43.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.9
0.65
1
73.4
41
Minor 5ss
35.4
-1.7
2.8
38.2
39.5
Minor BPS
63.5
0.28
1.6
67.71
40.6

Associated Gene:

Gene:
CLASP1
Ensembl Gene ID:
ENSAPLG00000002082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030590
17911881 - 18048536
136656
ENSAPLT00000017634
17911881 - 18048536
136656
ENSAPLT00000044738
17912326 - 18048536
136211
ENSAPLT00000002324
17911881 - 18034699
122819
ENSAPLT00000036970
17911881 - 18048536
136656
ENSAPLT00000036448
17912881 - 18048536
135656