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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18065730_18066403_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18065730 - 18066403
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAA
U12 Branch Point Sequence:
ATCGTTTCAGCT
Flanking Amino Acid:
TRLRLSRSKKTGGSKGYGFI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
57.9
0.2
1.4
63.4
44.3
Major PPT
78.4
0.64
0.8
71.9
32.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.7
-0.2
1.8
61.48
43.1

Associated Gene:

Gene:
NIFK
Ensembl Gene ID:
ENSAPLG00000024403
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024306
18062946 - 18066781
3836