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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18068818_18069496_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18068818 - 18069496
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
KTKFPADQYYRFHEHWRFVL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.9
41.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.3
0.73
0.8
78.5
28.8
Minor 5ss
40.4
-1.1
2.8
51.6
45.2
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
TSN
Ensembl Gene ID:
ENSAPLG00000030910
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036844
18066887 - 18070981
4095