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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18069613_18070319_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18069613 - 18070319
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTATCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
TREAVAEILGIEAERERGFH
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.4
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
86
26.8
Minor 5ss
41.8
-0.9
2.7
47.2
42.3
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
TSN
Ensembl Gene ID:
ENSAPLG00000030910
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036844
18066887 - 18070981
4095