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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18119943_18120316_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18119943 - 18120316
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTCTGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TATTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGATGGTAACA
Flanking Amino Acid:
KVDDYIKLHPASQMSEEMSK
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
66.2
40.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
46.7
-0.3
2.5
62.4
42.3
Minor BPS
44.6
-0.4
2.5
63.03
43.6

Associated Gene:

Gene:
IQCB1
Ensembl Gene ID:
ENSAPLG00000002873
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002919
18118267 - 18136458
18192