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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18125586_18126713_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18125586 - 18126713
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGAAT
5'SS Class:
major
3'SS Sequence:
TTATAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAATT
Flanking Amino Acid:
EQSSGKKEMQRLHQAACIIQ
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
67.7
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
1
71.7
42.5
Minor 5ss
27.5
-2.6
3.3
39.4
46.1
Minor BPS
61.6
0.44
1.9
84.39
36.6

Associated Gene:

Gene:
IQCB1
Ensembl Gene ID:
ENSAPLG00000002873
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002919
18118267 - 18136458
18192