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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18129651_18130126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18129651 - 18130126
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATT
Flanking Amino Acid:
SVLHSILGVNSSVLLQVDEE
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.1
79.9
36
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.4
0.77
0.7
77.7
31.1
Minor 5ss
38.3
-1.3
2.8
50.9
45.4
Minor BPS
53.2
0.18
1.5
68.14
36.8

Associated Gene:

Gene:
IQCB1
Ensembl Gene ID:
ENSAPLG00000002873
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002919
18118267 - 18136458
18192