About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18130227_18131302_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18130227 - 18131302
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATTGCGTGACT
Flanking Amino Acid:
FGGHIQLTKHVLQNDHFLQL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.5
36.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
29.6
-2.3
3.5
35.6
42.2
Minor BPS
48.6
-0
2.4
72.78
44.1

Associated Gene:

Gene:
IQCB1
Ensembl Gene ID:
ENSAPLG00000002873
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002919
18118267 - 18136458
18192