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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18135350_18135851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18135350 - 18135851
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTTCCCACA
Flanking Amino Acid:
DVPALLLALKEILNTPSLGR
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
52.9
43.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
34.6
-1.7
3.5
39.1
46.3
Minor BPS
42.7
-0.5
2.1
61.19
39

Associated Gene:

Gene:
IQCB1
Ensembl Gene ID:
ENSAPLG00000002873
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002919
18118267 - 18136458
18192