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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18136563_18137222_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18136563 - 18137222
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTTTCTATTT
Flanking Amino Acid:
QPRCAFHTVRYDFKPASIDT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
53.5
38
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.8
0.81
0.7
86.1
27.2
Minor 5ss
35.1
-1.7
3.4
52.1
44.7
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
EAF2
Ensembl Gene ID:
ENSAPLG00000003048
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031942
18136457 - 18147287
10831