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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18137318_18137993_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18137318 - 18137993
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGACTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTGACTTAACA
Flanking Amino Acid:
QVTITLPNIEGSTPPVTVFK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.4
0.48
1
65.7
39.5
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
68.6
0.58
1.6
76.13
41.2

Associated Gene:

Gene:
EAF2
Ensembl Gene ID:
ENSAPLG00000003048
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031942
18136457 - 18147287
10831
ENSAPLT00000003090
18136915 - 18147148
10234