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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18138965_18142347_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18138965 - 18142347
Intron Length:
3383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GTATCGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
GTATCGTTCACA
Flanking Amino Acid:
LSSPMDDIERELKAEASIMD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
71.5
0.48
1
64.5
41.2
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
50
-0
2.4
68.94
43.2

Associated Gene:

Gene:
EAF2
Ensembl Gene ID:
ENSAPLG00000003048
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031942
18136457 - 18147287
10831
ENSAPLT00000003090
18136915 - 18147148
10234