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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1815713_1816224_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1815713 - 1816224
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTATTATT
Flanking Amino Acid:
VITPLTDRCYRTLFGALHLH
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
60.6
0.42
1.9
84.75
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022933
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024767
1815624 - 1819916
4293