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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1816394_1817645_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1816394 - 1817645
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGATA
5'SS Class:
major
3'SS Sequence:
CTGTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATAAATTAATC
Flanking Amino Acid:
DYLALGKFFKGLLSCGAWAC
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
72.5
38.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.3
0.52
0.9
65.4
41.1
Minor 5ss
38.3
-1.3
3
48.9
47
Minor BPS
49.7
-0
1.8
61.62
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022933
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024767
1815624 - 1819916
4293