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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1817977_1819604_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1817977 - 1819604
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
ATATATTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
GRSELPDNLKALFRTVAMMV
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.4
1
63.2
42
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022933
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024767
1815624 - 1819916
4293