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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18226376_18228509_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18226376 - 18228509
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTTCTGACTT
Flanking Amino Acid:
ISTFVTPVLRGDVKCFGEDC
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.67
0.7
77.7
30.3
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
58.6
0.35
1.7
77.52
39.1

Associated Gene:

Gene:
SLC15A2
Ensembl Gene ID:
ENSAPLG00000003151
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003253
18214081 - 18250578
36498