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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18228588_18231220_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18228588 - 18231220
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGGATTATAATA
Flanking Amino Acid:
VPAALMVLALVVFIAGSGLY
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.6
0.69
0.9
77.6
40.8
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
48.4
-0.1
1.6
57.01
36.5

Associated Gene:

Gene:
SLC15A2
Ensembl Gene ID:
ENSAPLG00000003151
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003253
18214081 - 18250578
36498