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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18231304_18232243_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18231304 - 18232243
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTCCC
Flanking Amino Acid:
VLLEVCKCIGFAIKNRLKNR
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
46.8
-0.2
3.6
78.32
37.8

Associated Gene:

Gene:
SLC15A2
Ensembl Gene ID:
ENSAPLG00000003151
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003253
18214081 - 18250578
36498