Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18236450_18238114_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18236450 - 18238114

Intron Length:

1665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGCTCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTTTTCTTAATG

Flanking Amino Acid:

PLISMCKFNFTPIKKMATGM

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

1.2

84.4

33.5

Major BPS

0.92

0.9

86.2

29.1

Major PPT

72.1

0.5

0.8

66.1

35.3

Minor 5ss

39.8

-1.1

2.8

52.2

37.4

Minor BPS

76.3

0.69

1.3

74.4

38.6

Associated Gene:

Gene:

SLC15A2

Ensembl Gene ID:

ENSAPLG00000003151

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003253

18214081 - 18250578

36498