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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18244833_18246230_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18244833 - 18246230
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
ATAACCAGAAAA
Flanking Amino Acid:
VSEYLLLERDKYSNGKCITE
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
72.6
0.51
0.9
65.6
40.2
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
46.8
-0.2
1.8
59.68
38.7

Associated Gene:

Gene:
SLC15A2
Ensembl Gene ID:
ENSAPLG00000003151
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003253
18214081 - 18250578
36498