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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18248750_18249789_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18248750 - 18249789
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCAC
5'SS Class:
major
3'SS Sequence:
CTCCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGACCAGACCC
Flanking Amino Acid:
ITGLAFSYSQSPASMKSVLQ
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
56.2
43
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
85.8
0.81
0.7
83.7
24.5
Minor 5ss
37.2
-1.5
3.2
50.7
45.9
Minor BPS
43
-0.5
2
52.89
44.2

Associated Gene:

Gene:
SLC15A2
Ensembl Gene ID:
ENSAPLG00000003151
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003253
18214081 - 18250578
36498