Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18289385_18293198_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18289385 - 18293198

Intron Length:

3814

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAA|GCATTCATA

5'SS Class:

weak_major

3'SS Sequence:

TGTAGGATATAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTACATAAACA

Flanking Amino Acid:

FEDKAEIFQVKWSDFGFPGR

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.2

0.17

1.3

60.1

44.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

49.5

-0

1.2

50.9

46.1

Minor 5ss

40.5

-1.1

Minor BPS

53.1

0.09

69.25

42.8

Associated Gene:

Gene:

HSPBAP1

Ensembl Gene ID:

ENSAPLG00000003995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020576

18275198 - 18300636

25439

ENSAPLT00000004093

18275198 - 18300780

25583

ENSAPLT00000044754

18275198 - 18300835

25638

ENSAPLT00000028544

18275198 - 18303082

27885