About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18299207_18300725_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18299207 - 18300725
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCCATATGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCCTTACAC
Flanking Amino Acid:
PPEALSVGAEGEDVKPFTPE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.1
1.4
41.4
44.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.4
0.68
0.8
76.4
31.2
Minor 5ss
22.1
-3.2
3.6
22.1
36.9
Minor BPS
72.7
0.69
1.7
83.76
35.4

Associated Gene:

Gene:
HSPBAP1
Ensembl Gene ID:
ENSAPLG00000003995
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004093
18275198 - 18300780
25583