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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18299207_18300795_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18299207 - 18300795
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCGAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTCCTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCCTTACAC
Flanking Amino Acid:
CLLMVALPSLGEDVKPFTPE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
57.5
44.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.4
0.68
0.8
76.4
31.2
Minor 5ss
28
-2.5
3.9
32.5
42.6
Minor BPS
72.7
0.69
1.7
83.76
35.4

Associated Gene:

Gene:
HSPBAP1
Ensembl Gene ID:
ENSAPLG00000003995
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044754
18275198 - 18300835
25638