Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18299248_18303080_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18299248 - 18303080

Intron Length:

3833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAATTTGC

5'SS Class:

weak_major

3'SS Sequence:

CATGTATCATAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

ACTTCATGTATC

Flanking Amino Acid:

LHFFTALFFF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.5

0.32

1.2

59.3

40.6

Major BPS

78.6

0.71

79.6

32.9

Major PPT

55.1

0.12

1.1

58.5

Minor 5ss

43.5

-0.7

2.8

62.6

41.9

Minor BPS

46.2

-0.3

58.69

40.4

Associated Gene:

Gene:

HSPBAP1

Ensembl Gene ID:

ENSAPLG00000003995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028544

18275198 - 18303082

27885