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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18343357_18348527_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18343357 - 18348527
Intron Length:
5171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
SYRRSFCRLLSNFRFLMIAL
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
SLC49A4
Ensembl Gene ID:
ENSAPLG00000004155
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023486
18310439 - 18367626
57188
ENSAPLT00000004274
18307522 - 18364119
56598
ENSAPLT00000033021
18310545 - 18367626
57082
ENSAPLT00000030270
18310404 - 18367626
57223