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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18348637_18349280_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18348637 - 18349280
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTAGCTTTAACA
Flanking Amino Acid:
LILTPVHVSQVDAGWIGFWS
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
75.7
0.8
1.3
79.94
36.2

Associated Gene:

Gene:
SLC49A4
Ensembl Gene ID:
ENSAPLG00000004155
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030270
18310404 - 18367626
57223
ENSAPLT00000023486
18310439 - 18367626
57188
ENSAPLT00000004274
18307522 - 18364119
56598
ENSAPLT00000033021
18310545 - 18367626
57082