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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18349349_18353665_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18349349 - 18353665
Intron Length:
4317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTGCTTTTATT
Flanking Amino Acid:
GGCVVGIAMARFADFIRGML
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.8
0.67
0.8
78
35.1
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
58.9
0.36
1.7
76.14
40.9

Associated Gene:

Gene:
SLC49A4
Ensembl Gene ID:
ENSAPLG00000004155
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033021
18310545 - 18367626
57082
ENSAPLT00000030270
18310404 - 18367626
57223
ENSAPLT00000023486
18310439 - 18367626
57188
ENSAPLT00000004274
18307522 - 18364119
56598