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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_183609_183892_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183609 - 183892
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTAAAGT
Flanking Amino Acid:
YVAALGICAQDLMENGSSVG
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
38.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
38
-1.4
3.6
56.7
47.6
Minor BPS
49
0
1.9
67.13
44.4

Associated Gene:

Gene:
FAM126B
Ensembl Gene ID:
ENSAPLG00000015610
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036696
122670 - 198917
76248
ENSAPLT00000016309
182547 - 198206
15660
ENSAPLT00000016176
122670 - 198917
76248