About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18382424_18399165_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18382424 - 18399165
Intron Length:
16742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
NEKYTPMEFKTLNKNNLIPD
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
70
37.3
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
35.6
-1.6
3.5
48.7
47.8
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
SEMA5B
Ensembl Gene ID:
ENSAPLG00000004815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004964
18382268 - 18496095
113828