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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18404584_18406389_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18404584 - 18406389
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCATG
5'SS Class:
major
3'SS Sequence:
TGCACCAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCAAT
U12 Branch Point Sequence:
CTTGCACCAATC
Flanking Amino Acid:
YQDCNPHPCPAPSSGEDICI
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
72.7
44.5
Major BPS
51.7
0.04
1.2
60.3
34.2
Major PPT
62.2
0.28
1
51.8
41.7
Minor 5ss
48.5
-0.1
2.6
66
45.2
Minor BPS
42.9
-0.5
2.1
56.37
42.3

Associated Gene:

Gene:
SEMA5B
Ensembl Gene ID:
ENSAPLG00000004815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004964
18382268 - 18496095
113828