About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18435449_18437632_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18435449 - 18437632
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TCTTGTTCCACT
Flanking Amino Acid:
TLYHVMYIGTEYGTILKALS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
70
0.45
0.9
63.7
38.1
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
46.7
-0.1
2.3
71.32
46.1

Associated Gene:

Gene:
SEMA5B
Ensembl Gene ID:
ENSAPLG00000004815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048529
18394448 - 18454621
60174
ENSAPLT00000037293
18402215 - 18499533
97319
ENSAPLT00000004964
18382268 - 18496095
113828