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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18459815_18481047_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18459815 - 18481047
Intron Length:
21233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGTCGTGTGACT
Flanking Amino Acid:
LSLHNVSLIQATAWGSDEDT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
82.6
0.73
0.8
80.5
37
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
45.2
-0.2
2.4
68.99
42.3

Associated Gene:

Gene:
SEMA5B
Ensembl Gene ID:
ENSAPLG00000004815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004964
18382268 - 18496095
113828