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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18481094_18495165_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18481094 - 18495165
Intron Length:
14072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATAGCCTAACGA
Flanking Amino Acid:
ANRNQLIVGARNYLFRLSLH
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.7
0.58
0.9
69.9
35.6
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
43
-0.5
2.2
53.87
44.8

Associated Gene:

Gene:
SEMA5B
Ensembl Gene ID:
ENSAPLG00000004815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004964
18382268 - 18496095
113828