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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18679394_18682523_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18679394 - 18682523
Intron Length:
3130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GGTGATTTATTT
Flanking Amino Acid:
NNVLALYSKSAAAAESSLRL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
80
0.75
1
78.6
31
Major PPT
88.8
0.87
0.7
81.3
30.7
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
46.7
-0.1
1.8
62.04
42.3

Associated Gene:

Gene:
PDIA5
Ensembl Gene ID:
ENSAPLG00000005015
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005204
18676840 - 18765366
88527