Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18703111_18712175_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18703111 - 18712175

Intron Length:

9065

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTTTGTTTA

5'SS Class:

weak_major

3'SS Sequence:

CTGTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

ATCAATATAATT

Flanking Amino Acid:

INIWNVRSVHVLAGMNVYSA

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.2

70.9

35.1

Major BPS

0.72

78.4

31.2

Major PPT

89.2

0.88

0.7

29.4

Minor 5ss

48.7

-0.1

2.4

63.8

40.9

Minor BPS

47.5

-0.1

1.8

64.91

39.7

Associated Gene:

Gene:

PDIA5

Ensembl Gene ID:

ENSAPLG00000005015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005204

18676840 - 18765366

88527